2021
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Journal Articles
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Bedir, Erdal ; Karakoyun, Cigdem; Dogan, Gamze ; Kuru, Gulten ; Kucuksolak, Melis ; Yusufoglu, Hasan New Cardenolides from Biotransformation of Gitoxigenin by the Endophytic Fungus Alternaria eureka 1E1BL1: Characterization and Cytotoxic Activities Journal Article Molecules, 26 (10), pp. 3030, 2021. BibTeX @article{bedir2021new,
title = {New Cardenolides from Biotransformation of Gitoxigenin by the Endophytic Fungus Alternaria eureka 1E1BL1: Characterization and Cytotoxic Activities},
author = {Bedir, Erdal and Karakoyun,Cigdem and Dogan, Gamze and Kuru, Gulten and Kucuksolak, Melis and Yusufoglu, Hasan},
year = {2021},
date = {2021-01-01},
journal = {Molecules},
volume = {26},
number = {10},
pages = {3030},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Yakubogullari, Nilgun ; Cagir, Ali ; Bedir, Erdal ; Sag, Duygu Astragalus Saponins, Astragaloside VII and Newly Synthesized Derivatives, Induce Dendritic Cell Maturation and T Cell Activation Through IL-1β Production Journal Article bioRxiv, 2021. BibTeX @article{yakubogullari2021astragalus,
title = {Astragalus Saponins, Astragaloside VII and Newly Synthesized Derivatives, Induce Dendritic Cell Maturation and T Cell Activation Through IL-1β Production},
author = {Yakubogullari, Nilgun and Cagir, Ali and Bedir, Erdal and Sag, Duygu},
year = {2021},
date = {2021-01-01},
journal = {bioRxiv},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Uner, Goklem ; Bedir, Erdal ; Sercinoglu, Onur ; Kirmizibayrak, Petek Ballar Sapogenin based self-assembly structures activating a non-apoptotic cell death via multiple pathways Journal Article bioRxiv, 2021. BibTeX @article{uner2021sapogenin,
title = {Sapogenin based self-assembly structures activating a non-apoptotic cell death via multiple pathways},
author = {Uner, Goklem and Bedir, Erdal and Sercinoglu, Onur and Kirmizibayrak, Petek Ballar},
year = {2021},
date = {2021-01-01},
journal = {bioRxiv},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Karakoyun, Cigdem ; Kucuksolak, Melis ; Bilgi, Eyup ; Dogan, Gamze ; Comlekci, Yigit Ege ; Bedir, Erdal Five new cardenolides transformed from oleandrin and nerigoside by Alternaria eureka 1E1BL1 and Phaeosphaeriasp. 1E4CS-1 and their cytotoxic activities Journal Article Phytochemistry Letters, 41 , pp. 152–157, 2021. BibTeX @article{karakoyun2021five,
title = {Five new cardenolides transformed from oleandrin and nerigoside by Alternaria eureka 1E1BL1 and Phaeosphaeriasp. 1E4CS-1 and their cytotoxic activities},
author = {Karakoyun, Cigdem and Kucuksolak, Melis and Bilgi, Eyup and Dogan, Gamze and Comlekci, Yigit Ege and Bedir, Erdal},
year = {2021},
date = {2021-01-01},
journal = {Phytochemistry Letters},
volume = {41},
pages = {152--157},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Duman, Seda ; Ekiz, Guner ; Yilmaz, Sinem ; Yusufoglu, Hasan ; Kirmizibayrak, Petek Ballar ; Bedir, Erdal Telomerase activators from 20 (27)-octanor-cycloastragenol via biotransformation by the fungal endophytes Journal Article Bioorganic Chemistry, 109 , pp. 104708, 2021. BibTeX @article{duman2021telomerase,
title = {Telomerase activators from 20 (27)-octanor-cycloastragenol via biotransformation by the fungal endophytes},
author = {Duman, Seda and Ekiz, Guner and Yilmaz, Sinem and Yusufoglu, Hasan and Kirmizibayrak, Petek Ballar and Bedir, Erdal
},
year = {2021},
date = {2021-01-01},
journal = {Bioorganic Chemistry},
volume = {109},
pages = {104708},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Yakubogullari, Nilgun ; Coven, Furkan Ozan ; Cebi, Nusin ; Coven, Fethiye ; Coven, Nejdet ; Genc, Rukan ; Bedir, Erdal ; Nalbantsoy, Ayse Evaluation of adjuvant activity of Astragaloside VII and its combination with different immunostimulating agents in Newcastle Disease vaccine Journal Article Biologicals, 70 , pp. 28–37, 2021. BibTeX @article{yakubogullari2021evaluation,
title = {Evaluation of adjuvant activity of Astragaloside VII and its combination with different immunostimulating agents in Newcastle Disease vaccine},
author = {Yakubogullari, Nilgun and Coven, Furkan Ozan and Cebi, Nusin and Coven, Fethiye and Coven, Nejdet and Genc, Rukan and Bedir, Erdal and Nalbantsoy, Ayse},
year = {2021},
date = {2021-01-01},
journal = {Biologicals},
volume = {70},
pages = {28--37},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Aydogan, Fadime ; Aygun, Muhittin ; Yusufoglu, Hasan ; Karaalp, Canan ; Bedir, Erdal ; others, An unprecedented diterpene with three new neoclerodanes from Teucrium sandrasicum O. Schwarz Journal Article Journal of Molecular Structure, 1231 , pp. 129919, 2021. BibTeX @article{aydougan2021unprecedented,
title = {An unprecedented diterpene with three new neoclerodanes from Teucrium sandrasicum O. Schwarz},
author = {Aydogan, Fadime and Aygun, Muhittin and Yusufoglu, Hasan and Karaalp, Canan and Bedir, Erdal and others},
year = {2021},
date = {2021-01-01},
journal = {Journal of Molecular Structure},
volume = {1231},
pages = {129919},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Icen, Mehmet Sina ; Gurbuz, Ilhan ; Bedir, Erdal ; Gunbatan, Tugba ; Demirci, Fatih Isolation of rosmarinic acid and methyl rosmarinate as lipoxygenase inhibitors from Salvia palaestina Benth. by activity-guided fractionation Journal Article South African Journal of Botany, 141 , pp. 177–182, 2021. BibTeX @article{iccen2021isolation,
title = {Isolation of rosmarinic acid and methyl rosmarinate as lipoxygenase inhibitors from Salvia palaestina Benth. by activity-guided fractionation},
author = {Icen, Mehmet Sina and Gurbuz, Ilhan and Bedir, Erdal and Gunbatan, Tugba and Demirci, Fatih},
year = {2021},
date = {2021-01-01},
journal = {South African Journal of Botany},
volume = {141},
pages = {177--182},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Aksoy, Semiha Cetinel ; Kucuksolak, Melis ; Uzel, Atac ; Bedir, Erdal Benzodiazepine Derivatives from Marine-Derived Streptomyces cacaoi 14CM034 Journal Article RECORDS OF NATURAL PRODUCTS, 15 (6), pp. 602–607, 2021. BibTeX @article{aksoy2021benzodiazepine,
title = {Benzodiazepine Derivatives from Marine-Derived Streptomyces cacaoi 14CM034},
author = {Aksoy, Semiha Cetinel and Kucuksolak, Melis and Uzel, Atac and Bedir, Erdal},
year = {2021},
date = {2021-01-01},
journal = {RECORDS OF NATURAL PRODUCTS},
volume = {15},
number = {6},
pages = {602--607},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Sakalli, Tugce ; Surmeli, Nur Basak Functional characterization of a novel CYP119 variant to explore its biocatalytic potential Journal Article Biotechnology and Applied Biochemistry, 2021. BibTeX @article{sakalli2021functional,
title = {Functional characterization of a novel CYP119 variant to explore its biocatalytic potential},
author = {Sakalli, Tugce and Surmeli, Nur Basak},
year = {2021},
date = {2021-01-01},
journal = {Biotechnology and Applied Biochemistry},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Anil-Inevi, Muge ; Delikoyun, Kerem ; Mese, Gulistan ; Tekin, Cumhur H; Ozcivici, Engin Axial-circular magnetic levitation assisted biofabrication and manipulation of cellular structures Journal Article bioRxiv, 2021. BibTeX @article{Anil-Inevi2021.01.26.428192,
title = {Axial-circular magnetic levitation assisted biofabrication and manipulation of cellular structures},
author = {Anil-Inevi, Muge and Delikoyun, Kerem and Mese, Gulistan and Tekin, H. Cumhur and Ozcivici, Engin},
year = {2021},
date = {2021-01-01},
journal = {bioRxiv},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Tarim, Alperay E; Karakuzu, Betul ; Oksuz, Cemre ; Sarigil, Oyku ; Kizilkaya, Melike ; Al-Ruweidi, Mahmoud Khatib A A; Yalcin, Huseyin Cagatay ; Ozcivici, Engin ; Tekin, Cumhur H Microfluidic-based virus detection methods for respiratory diseases Journal Article Emergent Materials, 2021. BibTeX @article{Tarim2021,
title = {Microfluidic-based virus detection methods for respiratory diseases},
author = {Tarim, E Alperay and Karakuzu, Betul and Oksuz, Cemre and Sarigil, Oyku and Kizilkaya, Melike and Al-Ruweidi, Mahmoud Khatib A A and Yalcin, Huseyin Cagatay and Ozcivici, Engin and Tekin, H Cumhur},
year = {2021},
date = {2021-01-01},
journal = {Emergent Materials},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Delikoyun, Kerem ; Yaman, Sena ; Yilmaz, Esra ; Sarigil, Oyku ; Anil-Inevi, Muge ; Telli, Kubra ; Yalcin-Ozuysal, Ozden ; Ozcivici, Engin ; Tekin, Cumhur H HologLev: A Hybrid Magnetic Levitation Platform Integrated with Lensless Holographic Microscopy for Density-Based Cell Analysis Journal Article ACS Sensors, 2021. BibTeX @article{delikoyun2021hologlev,
title = {HologLev: A Hybrid Magnetic Levitation Platform Integrated with Lensless Holographic Microscopy for Density-Based Cell Analysis},
author = {Delikoyun, Kerem and Yaman, Sena and Yilmaz, Esra and Sarigil, Oyku and Anil-Inevi, Muge and Telli, Kubra and Yalcin-Ozuysal, Ozden and Ozcivici, Engin and Tekin, H. Cumhur},
year = {2021},
date = {2021-01-01},
journal = {ACS Sensors},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Goelzer, Matthew ; Dudakovic, Amel ; Olcum, Melis ; Sen, Buer ; Ozcivici, Engin ; Rubin, Janet ; van Wijnen, Andre J; Uzer, Gunes Lamin A/C Is Dispensable to Mechanical Repression of Adipogenesis Journal Article International Journal of Molecular Sciences, 2021. BibTeX @article{ijms22126580,
title = {Lamin A/C Is Dispensable to Mechanical Repression of Adipogenesis},
author = {Goelzer, Matthew and Dudakovic, Amel and Olcum, Melis and Sen, Buer and Ozcivici, Engin and Rubin, Janet and van Wijnen, Andre J. and Uzer, Gunes},
year = {2021},
date = {2021-01-01},
journal = {International Journal of Molecular Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Anil-Inevi, Muge ; Delikoyun, Kerem ; Mese, Gulistan ; Tekin, Cumhur H; Ozcivici, Engin Magnetic levitation assisted biofabrication, culture, and manipulation of 3D cellular structures using a ring magnet based setup Journal Article Biotechnology and Bioengineering, 2021. BibTeX @article{anil2021magnetic,
title = {Magnetic levitation assisted biofabrication, culture, and manipulation of 3D cellular structures using a ring magnet based setup},
author = {Anil-Inevi, Muge and Delikoyun, Kerem and Mese, Gulistan and Tekin, H. Cumhur and Ozcivici, Engin},
year = {2021},
date = {2021-01-01},
journal = {Biotechnology and Bioengineering},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Tarim, Alperay E; Karakuzu, Betul ; Oksuz, Cemre ; Sarigil, Oyku ; Kizilkaya, Melike ; Al-Ruweidi, Mahmoud Khatib AA ; Yalcin, Huseyin Cagatay ; Ozcivici, Engin ; Tekin, Cumhur H Microfluidic-based virus detection methods for respiratory diseases Journal Article Microfluidic-based virus detection methods for respiratory diseases, 2021. BibTeX @article{tarim2021microfluidic,
title = {Microfluidic-based virus detection methods for respiratory diseases},
author = {Tarim, E Alperay and Karakuzu, Betul and Oksuz, Cemre and Sarigil, Oyku and Kizilkaya, Melike and Al-Ruweidi, Mahmoud Khatib AA and Yalcin, Huseyin Cagatay and Ozcivici, Engin and Tekin, H Cumhur},
year = {2021},
date = {2021-01-01},
journal = {Microfluidic-based virus detection methods for respiratory diseases},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Unal, Yagmur Ceren; Yavuz, Busra; Ozcivici, Engin; Mese, Gulistan The role of connexins in breast cancer: from misregulated cell communication to aberrant intracellular signaling Journal Article Tissue Barriers, 2021. BibTeX @article{unal2021role,
title = {The role of connexins in breast cancer: from misregulated cell communication to aberrant intracellular signaling},
author = {Yagmur Ceren Unal and Busra Yavuz and Engin Ozcivici and Gulistan Mese},
year = {2021},
date = {2021-01-01},
journal = {Tissue Barriers},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Sarigil, Oyku ; Anil‐Inevi, Muge ; Firatligil‐Yildirir, Burcu ; Unal, Yagmur Ceren ; Yalcin‐Ozuysal, Ozden ; Mese, Gulistan ; Tekin, Cumhur H; Ozcivici, Engin Scaffold‐free biofabrication of adipocyte structures with magnetic levitation Journal Article Biotechnology and Bioengineering, 2021. BibTeX @article{Sarigil2021b,
title = {Scaffold‐free biofabrication of adipocyte structures with magnetic levitation},
author = {Sarigil, Oyku and Anil‐Inevi, Muge and Firatligil‐Yildirir, Burcu and Unal, Yagmur Ceren and Yalcin‐Ozuysal, Ozden and Mese, Gulistan and Tekin, H Cumhur and Ozcivici, Engin},
year = {2021},
date = {2021-01-01},
journal = {Biotechnology and Bioengineering},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Zelcak, Aykut; Unal, Yagmur Ceren; Mese, Gulistan; Bulmus, Volga A diaminoethane motif bearing low molecular weight polymer as a new nucleic acid delivery agent Journal Article Journal of Drug Delivery Science and Technology, 2021. BibTeX @article{ZELCAK2021102551,
title = {A diaminoethane motif bearing low molecular weight polymer as a new nucleic acid delivery agent},
author = {Aykut Zelcak and Yagmur Ceren Unal and Gulistan Mese and Volga Bulmus},
year = {2021},
date = {2021-01-01},
journal = {Journal of Drug Delivery Science and Technology},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Sözmen, Alper Baran ; Arslan Yildiz, Ahu Cost-effective and rapid prototyping of PMMA microfluidic device via polymer-assisted bonding Journal Article Microfluidics and Nanofluidics, 2021. BibTeX @article{sozmen2021cost,
title = {Cost-effective and rapid prototyping of PMMA microfluidic device via polymer-assisted bonding},
author = {Sözmen, Alper Baran and Arslan Yildiz, Ahu},
year = {2021},
date = {2021-01-01},
journal = {Microfluidics and Nanofluidics},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Guzelgulgen, Meltem ; Ozkendir-Inanc, Dilce ; Yildiz, Umit Hakan ; Arslan-Yildiz, Ahu Glucuronoxylan-based quince seed hydrogel: A promising scaffold for tissue engineering applications Journal Article International Journal of Biological Macromolecules, 2021. BibTeX @article{guzelgulgen2021glucuronoxylan,
title = {Glucuronoxylan-based quince seed hydrogel: A promising scaffold for tissue engineering applications},
author = {Guzelgulgen, Meltem and Ozkendir-Inanc, Dilce and Yildiz, Umit Hakan and Arslan-Yildiz, Ahu},
year = {2021},
date = {2021-01-01},
journal = {International Journal of Biological Macromolecules},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Onbas, Rabia ; Arslan Yildiz, Ahu Fabrication of Tunable 3D Cellular Structures in High Volume Using Magnetic Levitation Guided Assembly Journal Article ACS Applied Bio Materials, 2021. BibTeX @article{onbas2021fabrication,
title = {Fabrication of Tunable 3D Cellular Structures in High Volume Using Magnetic Levitation Guided Assembly},
author = {Onbas, Rabia and Arslan Yildiz, Ahu},
year = {2021},
date = {2021-01-01},
journal = {ACS Applied Bio Materials},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Inproceedings
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Oksuz, Cemre ; Tekin, Huseyin Cumhur A Vacuum-Integrated Centrifugal Microfluidic Chip For Density-Based Separation of Microparticles. Inproceedings 34th IEEE International Conference on Micro Electro Mechanical Systems (MEMS 2021), 2021. BibTeX @inproceedings{Oksuz2021,
title = {A Vacuum-Integrated Centrifugal Microfluidic Chip For Density-Based Separation of Microparticles.},
author = {Oksuz, Cemre and Tekin, Huseyin Cumhur},
year = {2021},
date = {2021-01-01},
booktitle = {34th IEEE International Conference on Micro Electro Mechanical Systems (MEMS 2021)},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
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Delikoyun, Kerem ; Demir, Ali Aslan ; Tekin, Cumhur H Label-free detection of rare cancer cells using deep learning and magnetic levitation principle Inproceedings Label-free Biomedical Imaging and Sensing (LBIS) 2021, 2021. BibTeX @inproceedings{Delikoyun2021,
title = {Label-free detection of rare cancer cells using deep learning and magnetic levitation principle},
author = {Delikoyun, Kerem and Demir, Ali Aslan and Tekin, H Cumhur},
year = {2021},
date = {2021-01-01},
booktitle = {Label-free Biomedical Imaging and Sensing (LBIS) 2021},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
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Tulu, Ilayda ; Karaca, Ilayda ; Degirmenci, Mehmet ; Delikoyun, Kerem ; Tekin, Huseyin Cumhur Deep Learning and Cloud-Based Online Decision Support Platform for Detection of Leukemia. Inproceedings International Artifical Intelligence in Health Congress, 2021. BibTeX @inproceedings{Tulu2021,
title = {Deep Learning and Cloud-Based Online Decision Support Platform for Detection of Leukemia.},
author = {Tulu, Ilayda and Karaca, Ilayda and Degirmenci, Mehmet and Delikoyun, Kerem and Tekin, Huseyin Cumhur},
year = {2021},
date = {2021-01-01},
booktitle = {International Artifical Intelligence in Health Congress},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
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Size Based Microparticle Separation Using Negative Magnetophoresis. Inproceedings 25th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2021), 2021. BibTeX @inproceedings{Ozcelik2021,
title = {Size Based Microparticle Separation Using Negative Magnetophoresis.},
year = {2021},
date = {2021-01-01},
booktitle = {25th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2021)},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
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Ozcelik, Ozge ; Oksuz, Cemre ; Tekin, Huseyin Cumhur Size Based Microparticle Separation Using Negative Magnetophoresis. Inproceedings 25th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2021), 2021. BibTeX @inproceedings{Ozcelik2021b,
title = {Size Based Microparticle Separation Using Negative Magnetophoresis.},
author = {Ozcelik, Ozge and Oksuz, Cemre and Tekin, Huseyin Cumhur},
year = {2021},
date = {2021-01-01},
booktitle = {25th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2021)},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
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Incollections
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Delikoyun, Kerem ; Cine, Ersin ; Anil-Inevi, Muge ; Sarigil, Oyku ; Ozcivici, Engin ; Tekin, Cumhur H Deep learning-based cellular image analysis for intelligent medical diagnosis Incollection Artificial Intelligence for Data-Driven Medical Diagnosis, 2021. BibTeX @incollection{Delikoyun2021c,
title = {Deep learning-based cellular image analysis for intelligent medical diagnosis},
author = {Delikoyun, Kerem and Cine, Ersin and Anil-Inevi, Muge and Sarigil, Oyku and Ozcivici, Engin and Tekin, H Cumhur},
year = {2021},
date = {2021-01-01},
booktitle = {Artificial Intelligence for Data-Driven Medical Diagnosis},
keywords = {},
pubstate = {published},
tppubtype = {incollection}
}
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Delikoyun, Kerem ; Demir, Ali Aslan ; Ozcivici, Engin ; Tekin, Huseyin C Ex vivo biological imaging Incollection Imaging Modalities for Biological and Preclinical Research: A Compendium, 1 , 2021. BibTeX @incollection{Delikoyun2021a,
title = {Ex vivo biological imaging},
author = {Delikoyun, Kerem and Demir, Ali Aslan and Ozcivici, Engin and Tekin, Huseyin C},
year = {2021},
date = {2021-01-01},
booktitle = {Imaging Modalities for Biological and Preclinical Research: A Compendium},
volume = {1},
keywords = {},
pubstate = {published},
tppubtype = {incollection}
}
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Tarım, Ergün Alperay ; Karakuzu, Betül ; Oksuz, Cemre ; Tekin, Hüseyin Cumhur Telemedicine applications for pandemic diseases, with a focus on COVID-19. Incollection Data Science for COVID-19: Volume 2: Societal and Medical Perspectives, 2021. BibTeX @incollection{Tarm2021,
title = {Telemedicine applications for pandemic diseases, with a focus on COVID-19.},
author = {Tarım, Ergün Alperay and Karakuzu, Betül and Oksuz, Cemre and Tekin, Hüseyin Cumhur},
year = {2021},
date = {2021-01-01},
booktitle = {Data Science for COVID-19: Volume 2: Societal and Medical Perspectives},
keywords = {},
pubstate = {published},
tppubtype = {incollection}
}
|
